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Companion Website

Sansom & Horton: Internet for Molecular Biologists

Useful Web Links

Useful Web Links

* Protein explorer :http://www.proteinexplorer.org

* Netscape: www.netscape.com

* Chime from MDL Information Systems: www.mdlchime.com

* World Index of Molecular Visualization Resources (includes information on other viewers: Cn3D, DINO, MAGE, PyMOL, VMD: http://www.molvisindex.org

*review fo the VMD molecular viewer: http://news.bmn/com/hmsbeagle/110/review s/sreview

* PDB Lite search interface: http://www.pdblite.org

* Protein Data Bank www.pdb.org

* UMass Chime Resources: www.umass.edu/microbio/chime

* DRuMS standard color schemes: www.umass.edu/molvis/drums

* Molecular Visualization Freeware Email List: www.umass.edu/microbio/rasmol/raslist.htm

* Biochemistry in 3D: www.worthpublishers.com/lehninger3d/

* Alignments by Combinatorial Extension c1.sdsc.edu/ce.html

* Win4Lin (commercial, Windows support for Linux): www.trelos.com

* VMWare (commercial, Windows support for Linux) www.vmware.com

* Citrix Metaframe (commercial, remote Windows from unix): www.citrix.com

* DeepView/Swiss-PDBViewer (also see DeepView section of World Index): www.expasy.ch/spdbv/mainpage.html

* Accelrys/WebLab Fiewer Pro (also see World Index): www.accelrys.com

* RasMol 2.6 with help for beginners www.umass.edu/microbio/rasmol

* RasMol 2.7: www.openrasmol.org

* History of molecular visualization: www.umass.edu/microbio/rasmol/history.htm

* Making Chime Tutorials: www.umass.edu/microbio/chime/prssw c/presreqt.htm

* Morphing Methods (includes detailed instructions on aligning molecules to compare their structures www.umass.edu/microbio/chime/m orpher/morphmtd.htm

* XYZ animations of infrared spectra (by Motyka, Lahti and Lancashire): www.umass.edu/microbio/chime/ir-spect

* DeepView Swiss-Pdb Viewer: www.expasy.cbr.nrc.ca/spdbv

* Tutorial For Deep View/Swiss-PdbViewer (by Gail Rhodes): www.usm.maine.edu/rhodes/SPVTut/index. html

*WebLab Viewer www.accelrys.coim/viewer/index.html