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Beebee & Rowe: An Introduction to Molecular Ecology: 2e

Chapter 09

Review articles

  • Allen, E. E. and Banfield, J. F. (2005) Community genomics in microbial ecology and evolution. Nature Reviews, Microbiology, 3, 489-498. [DOI: 10.1038/nrmicro1157]

  • Baker, G. C., Smith, J. J. and Cowan, D. A. (2003) Review and re-analysis of domainspecific 16S primers. Journal of Microbial Methods, 55, 541-555. [DOI: 10.1016/j.mimet.2003.08.009]

  • Breitbart, M. and Rohwer, F. (2005) Here a virus, there a virus, everywhere the same virus? Trends in Microbiology, 13, 278-284. [PubMed: 15936660] [DOI: 10.1016/j.tim.2005.04.003]

  • Daniel, R. (2005) The metagenomics of soil. Nature Reviews, Microbiology, 3, 470-478. [DOI: 10.1038/nrmicro1160]

  • DeLong, E. F. (2005) Microbial community genomics in the ocean. Nature Reviews, Microbiology, 3, 459-469. [DOI: 10.1038/nrmicro1158]

  • Deutschbauer, A. M., Chivian, D. and Arkin, A. P. (2006) Genomics for environmental microbiology. Current Opinion in Biotechnology, 17, 229-235. [PubMed: 16650754] [DOI: 10.1016/j.copbio.2006.04.003]

  • Edwards, R. A. and Rohwer, F. (2005) Viral metagenomics. Nature Reviews, Microbiology, 3, 504-510. [DOI: 10.1038/nrmicro1163]

  • Janssen, P. H. (2006) Identifying the dominant soil bacterial taxa in libraries of 16s rRNA and 16S rRNA genes. Applied and Environmental Microbiology, 72, 1719-1728. [PubMed: 16517615] [DOI: 10.1128/AEM.72.3.1719-1728.2006]

  • Podar, M. and Reysenbach, A-L. (2006) New opportunities revealed by biotechnological explorations of extremophiles. Current Opinion in Biotechnology, 17, 250-255. [PubMed: 16701993] [DOI: 10.1016/j.copbio.2006.05.002]

  • Riesenfeld, C. S., Schloss, P. D. and Handelsman, J. (2004) Metagenomics: genomic analysis of microbial communities. Annual Review of Genetics, 38, 525-552. [PubMed: 15568985] [DOI: 10.1146/annurev.genet.38.072902.091216]

  • Xu, J. (2006) Microbial ecology in the age of genomics and metagenomics: concepts, tools and recent advances. Molecular Ecology, 15, 1713-1731. [PubMed: 16689892] [DOI: 10.1111/j.1365-294X.2006.02882.x]

  • Zhou, J. (2003) Microarrays for bacterial detection and microbial community analysis. Current Opinions in Microbiology, 6, 288-294. [DOI: 10.1016/S1369-5274%2803%2900052-3]